DNA Damage Atlas

GSM3057959-Stag3_Rec8_doublemutant_ChIP_replicate_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871345


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

Stag3-/-Rec8-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3057964-Stag3_Rec8_doublemutant_input_replicate_1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr415196716015197190915196970378.6777+
chr911509816811510189611510011664.8859+
chr1311855671111856047111855834459.7384-
chr310761486410761921010761681159.3863+
chr413944882813945271013945102256.1919-
chr1189609268896139468961186055.8641-
chr413721628813721898213721724455.3171+
chr238135590381401233813772955.2688-
chr117212628617213119317212902254.5775+
chr413936287413936697613936535454.2312+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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