DNA Damage Atlas

GSM3061025-WT_oxoG_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6879695


Source Project ID:   

GSE112212

Organism:   

Saccharomyces cerevisiae


Strain:   

BY4741


Genotype:   

MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

Click-Code-Seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
II144323561504931.851+
I189598194555189724799.203+
IX518815640251881722.569+
VI115004115736115096692.037+
XIV332963434233328691.257+
XV06851685.794+
V569724570469569794685.773+
VIII175467176888175510645.947+
X120421121837120446639.054+
II779661780908779661637.125+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
XII1120311975112031867.53+
II1445229315041863.56+
XI057811241.38+
IV25457251235.55+
I075211199.49+
II7796617805807796611150.57+
IV600800601693600801754.72+
IX234192420623435713.263+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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