DNA Damage Atlas

GSM3083440-pro-B_VH81X-CBEscr-scr_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6950633


Source Project ID:   

GSE113023

Cell Type:   

BM pro B cell


Organism:   

Mus musculus


Strain:   

129SVE


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113476301113476755113476514134351+
chr12113607725113608152113607931120955+
chr12113481136113481426113481147119341+
chr1211346698511346774111346718885313.4+
chr1211349600011349758711349633380276.9+
chr1211345732911345808511345753677414.8+
chr1211343466911343512211343487866461.2+
chr1211346219411346276211346219657573.6+
chr1211348904011349011411348956654522.2+
chr1211345186811345274111345207550423+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496132113496582113496333280646+
chr12113476510113476755113476514217941+
chr12113457533113457843113457536176258+
chr12113481136113481377113481147159010+
chr12113471864113472108113471866157484+
chr12113452072113452328113452075147056+
chr12113485246113485476113485247136320+
chr12113434871113435115113434878136199+
chr12113462194113462458113462196130740+
chr12113607730113608152113607931100236+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab