DNA Damage Atlas

GSM3084372-DJ_Intergenic-del_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6956048


Source Project ID:   

GSE113023

Cell Type:   

v-Abl kinase transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Dose:   

3mM


Genotype:   

Intergenicdel


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113597940113598545113598166651053+
chr12113607466113608534113607933259719+
chr1211361681211361752011361715081925.7+
chr1211363069111363117711363089447055.3+
chr121136452001136454281136452027210.48+
chr121136814351136816571136814372461.56+
chr121138653681138655881138653681294.15+
chr121137773011137775061137773011209.64+
chr12113723281113723502113723281810.379+
chr12113843139113843342113843140520.293+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496352113496574113496354991586+
chr12113597961113598545113598166757664+
chr12113607730113608161113607933568012+
chr12113616812113617464113617150102499+
chr1211363089011363117711363089470019.7+
chr121136452001136454271136452029529.37+
chr121136814371136816401136814372174.78+
chr121137773011137775061137773011619.64+
chr121138653681138655721138653681401.68+
chr12113723281113723485113723281989.035+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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