DNA Damage Atlas

GSM3084389-DJ_IGCR1del_VH81X-CBEdel_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6956065


Source Project ID:   

GSE113023

Cell Type:   

v-Abl kinase transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Dose:   

3mM


Genotype:   

IGCR1del VH81X-CBEdel


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113607699113608413113607931567322+
chr12113616697113617533113617150242138+
chr12113496349113497568113496354194000+
chr12113630658113631308113630894110960+
chr1211359259211359285011359259481743.1+
chr1211364499411364570911364520254505.2+
chr1211359816511359839211359816728210+
chr1211354522211354554611354533717593.9+
chr1211368123611368167511368143711067.4+
chr1211372327911372351011372328110699.7+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113607730113608413113607931611930+
chr12113616814113617460113617150331632+
chr12113496352113497568113496354172188+
chr12113630695113631201113630894166734+
chr12113645200113645489113645202113096+
chr12113592592113592822113592594112379+
chr1211368143711368167211368143719211.1+
chr1211359816611359838711359816715337.5+
chr121137232801137234951137232819330.55+
chr121136729741136731971136729744031.24+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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