Sample Detail

Basic Information

Manual

Sample ID:

SRR6982750

Source Project ID:

GSE112957

Cell Type:

A9 fibroblast

Organism:

Mus musculus

Strain:

C3H/An

Treatment:

mock infected

Treatment Time:

12hrs

Layout:

SINGLE

Instrument model:

NextSeq 500

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM3092215-12hpr_mock_input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	143483000	143483199	143483099	46.0064	/
rDNA	0	26799	13399	32.1086	/
rDNA	42000	45199	43599	31.8071	/
chrX	76598400	76599199	76598799	9.57284	/
chr2	3964400	3964999	3964699	7.54539	/
chr15	38118000	38118199	38118099	6.98831	/
chr11	104995800	104995999	104995899	6.40595	/
chr19	38264000	38264199	38264099	6.40595	/
chr5	9889800	9889999	9889899	6.40595	/
chr6	47632600	47632799	47632699	6.40595	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	26799	13399	32.1086	/
rDNA	42000	45199	43599	31.8071	/
chrX	76598400	76599199	76598799	9.57284	/
chr17	23545600	23545799	23545699	5.82359	/
chr4	150280200	150280399	150280299	5.82359	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download