DNA Damage Atlas

GSM3092198-20hpi_gh2ax_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6982755


Source Project ID:   

GSE112957

Cell Type:   

A9 fibroblast


Organism:   

Mus musculus


Strain:   

C3H/An


Treatment:   

MVN infection


Treatment Time:   

20hrs


Treatment Dose:   

MOI:5


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143483000143483199143483099205.684/
rDNA02439912199129.669/
chr930204003020599302049978.2177/
rDNA42000451994359940.7276/
chrX7659860076599399765989997.93671/
rDNA2520026599258997.82943/
chr21226812001226827991226819997.57121/
chrM1080016199134996.62023/
chr23263200032632999326324995.77071/
chr52428420024285199242846995.77071/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX143483000143483199143483099205.684/
rDNA02439912199129.669/
chr930204003020599302049978.2177/
rDNA42000451994359940.7276/
chrX7659860076599199765989999.62427/
rDNA2520026599258997.82943/
chr21226812001226827991226819997.57121/
chrM1100016199134996.8749/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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