DNA Damage Atlas

GSM3182666-MCF10AsiSIER_NT_PARP1_chip

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR7289042


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-PARP1)


Others:   

control: GSM2442939-MCF10AsiSIER_INPUT_chip


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5142785051142785054/930.176/
chr6170468677170468680/367.744/
chr1110036701110036704/324.48/
chr1181073962181073965/324.48/
chr1228328082228328085/324.48/
chr14097464540974648/324.48/
chr24345255543452558/324.48/
chr156911212269112125/302.848/
chr121526832152686/259.584/
chr12750363027503633/259.584/
Download the Full Peak List


Visualization

Manual





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