DNA Damage Atlas

GSM3185283-MDA-MB-231_DMSO_9h_BrITL_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7290877


Source Project ID:   

GSE115625

Cell Type:   

MDA-MB-231


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

9hrs


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185285-MDA-MB-231_DMSO_9h_Input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM6174165631290335791.4/
chrM12244506276132470.8/
chrM46915546501727975.8/
chrM57776051588127702/
chrM0108338926912.4/
rDNA28409286242854078.2732/
chrUn_gl00022011975112016311996945.1246/
rDNA31784320113193343.6308/
rDNA13354150181372737.2759/
chrUn_gl00022012934512957412951434.4532/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM48765171501744097.1/
chrM12778156751290341505.1/
chrM12944086276135722.6/
chrM34102138929530.1/
rDNA13370141521372751.0365/
chrUn_gl00022011975112014811996946.8296/
chrUn_gl00022014298114318914302135.7122/
rDNA63596623651718.44/
rDNA17122002190817.5103/
chrUn_gl00022011922711943611928717.2687/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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