DNA Damage Atlas


GSM3185283-MDA-MB-231_DMSO_9h_BrITL_rep1




Basic Information

Manual

Sample ID:   

SRR7290877


Source Project ID:   

GSE115625

Cell Type:   

MDA-MB-231


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

9hrs


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185285-MDA-MB-231_DMSO_9h_Input


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM6174165631290335791.4/
chrM12244506276132470.8/
chrM46915546501727975.8/
chrM57776051588127702/
chrM0108338926912.4/
rDNA28409286242854078.2732/
chrUn_gl00022011975112016311996945.1246/
rDNA31784320113193343.6308/
rDNA13354150181372737.2759/
chrUn_gl00022012934512957412951434.4532/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM48765171501744097.1/
chrM12778156751290341505.1/
chrM12944086276135722.6/
chrM34102138929530.1/
rDNA13370141521372751.0365/
chrUn_gl00022011975112014811996946.8296/
chrUn_gl00022014298114318914302135.7122/
rDNA63596623651718.44/
rDNA17122002190817.5103/
chrUn_gl00022011922711943611928717.2687/
Download the Full Merged Peak List



Motif Analysis

Manual





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