DNA Damage Atlas

GSM3185286-MDA-MB-231_ATRi-plus-APH_9h_BrITL_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7290880


Source Project ID:   

GSE115625

Cell Type:   

MDA-MB-231


Organism:   

Homo sapiens


Treatment:   

VE-822 + Aphidicolin


Treatment Time:   

9hrs


Treatment Dose:   

0.5uM + 0.2uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185288-MDA-MB-231_ATRi-plus-APH_9h_Input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM6931732271839494.68/
chrM6286669564968461.79/
chrM7581821078118192.57/
chrM897116528131026755.56/
chrM4867548850166208.54/
chrM1282410827686185.71/
chrM8374868984995747.74/
chrM3010282895061/
rDNA13386141571372760.3865/
chrUn_gl00022011976712006311997060.154/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA13408139221372767.7802/
rDNA14323145481445860.7651/
rDNA16172072187226.4548/
chrUn_gl00022011877411897611886520.9123/
rDNA12709130191293318.7551/
rDNA27853075293218.169/
rDNA48880464611.3556/
chr214811929048119464481194237.5704/
chr19163343491633656916335747.16119/
chr164790330147903527479033286.43149/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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