DNA Damage Atlas

GSM3185289-MEFs_DMSO_18h_BrITL_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7290883


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

DMSO


Treatment Time:   

18hrs


Genotype:   

ATR+/- Bcl-xL-expressing


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185291-MEFs_DMSO_18h_Input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM10975157011358518597.5/
chrM236463254016580.6/
chrM15881162741606513579.6/
rDNA95401254311882838.951/
rDNA549694277410832.397/
rDNA438404530644934656.431/
rDNA419274364643149555.849/
rDNA04501199452.14/
rDNA126621724412939402.313/
rDNA488152765106359.614/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM10977156991358518613.3/
chrM256463254016585.7/
chrM15883162731606513684.1/
rDNA95491254011882842.317/
rDNA550194177410835.585/
rDNA438674530644934668.748/
rDNA420684361843149616.282/
rDNA126641594612939533.816/
rDNA04498199452.441/
rDNA490952665106397.892/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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