DNA Damage Atlas

GSM3185290-MEFs_DMSO_18h_BrITL_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7290884


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

DMSO


Treatment Time:   

18hrs


Genotype:   

ATR+/- Bcl-xL-expressing


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185291-MEFs_DMSO_18h_Input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM10977156991338918040.5/
chrM15883162731606915985.4/
chrM256471254015001.2/
chr9300668130069403006818323.015/
chr9300201030023113002136270.247/
chrUn_GL456392220062224922169218.195/
rDNA95491254010687171.748/
rDNA550194176915165.301/
rDNA420684361843133153.077/
chr12120028647120028960120028831134.778/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM10977156991338918040.5/
chrM15883162731606915985.4/
chrM256463254015019.8/
rDNA95491254010687171.748/
rDNA550194176915165.301/
chr12120028699120028960120028831161.63/
rDNA420684361843133153.077/
rDNA126641594612918131.633/
chr1560331001603312686033108398.5214/
chr1562272062622724166227235394.3633/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab