Sample Detail

Basic Information

Manual

Sample ID:

SRR7290886

Source Project ID:

GSE115625

Cell Type:

MEF

Organism:

Mus musculus

Treatment:

ATR-45 inhibitor + Aphidicolin

Treatment Time:

18hrs

Treatment Dose:

1uM + 0.2uM

Genotype:

ATR^+/- Bcl-xL-expressing

Layout:

SINGLE

Instrument model:

Illumina HiSeq 2500

Technique:

BrITL

Others:

control: GSM3185294-MEFs_ATRi-plus-APH_18h_Input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	5439	5643	5509	3225.02	/
chrM	99	438	317	2497.78	/
chrM	15995	16233	16069	2035.2	/
chrM	4720	4988	4766	2032.57	/
rDNA	6041	9354	6950	116.095	/
rDNA	42960	43388	43110	115.696	/
rDNA	9708	12483	10684	111.724	/
rDNA	12722	15031	12907	109.468	/
rDNA	5571	5908	5751	95.0772	/
rDNA	4973	5197	5105	70.7165	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	6041	9354	6950	116.095	/
rDNA	42960	43388	43110	115.696	/
rDNA	9722	12474	10684	112.658	/
rDNA	12731	15031	12907	109.896	/
rDNA	5571	5908	5751	95.0772	/
rDNA	4973	5197	5105	70.7165	/
rDNA	1312	1722	1524	70.3259	/
rDNA	1921	3015	2864	62.4949	/
rDNA	25	1168	188	61.7342	/
rDNA	3121	3493	3338	57.8904	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download