DNA Damage Atlas


GSM3185292-MEFs_ATRi-plus-APH_18h_BrITL_rep1




Basic Information

Manual

Sample ID:   

SRR7290886


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

1uM + 0.2uM


Genotype:   

ATR+/- Bcl-xL-expressing


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185294-MEFs_ATRi-plus-APH_18h_Input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM5439564355093225.02/
chrM994383172497.78/
chrM1599516233160692035.2/
chrM4720498847662032.57/
rDNA604193546950116.095/
rDNA429604338843110115.696/
rDNA97081248310684111.724/
rDNA127221503112907109.468/
rDNA55715908575195.0772/
rDNA49735197510570.7165/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA604193546950116.095/
rDNA429604338843110115.696/
rDNA97221247410684112.658/
rDNA127311503112907109.896/
rDNA55715908575195.0772/
rDNA49735197510570.7165/
rDNA13121722152470.3259/
rDNA19213015286462.4949/
rDNA25116818861.7342/
rDNA31213493333857.8904/
Download the Full Merged Peak List



Motif Analysis

Manual





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