DNA Damage Atlas


GSM3185293-MEFs_ATRi-plus-APH_18h_BrITL_rep2




Basic Information

Manual

Sample ID:   

SRR7290887


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

1uM + 0.2uM


Genotype:   

ATR+/- Bcl-xL-expressing


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BrITL


Others:   

control: GSM3185294-MEFs_ATRi-plus-APH_18h_Input


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA426934348043216200.322/
rDNA557193556910162.727/
rDNA97221247410691146.046/
rDNA01182198124.529/
rDNA439384530045104119.965/
rDNA312135093341118.238/
rDNA496552055105115.065/
rDNA127311531212921111.454/
rDNA191230152860111.094/
rDNA130917351521106.99/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA429604338843216239.025/
rDNA604193546910170.977/
rDNA97221247410691146.046/
rDNA251168198128.778/
rDNA312134933341123.324/
rDNA497351975105123.284/
rDNA439584529245104122.46/
rDNA127311503112921119.301/
rDNA192130152860112.008/
rDNA131217221521111.165/
Download the Full Merged Peak List



Motif Analysis

Manual





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