DNA Damage Atlas


GSM3189600-NPC1_Chr1_DMSO_ExpA




Basic Information

Manual

Sample ID:   

SRR7310378


Source Project ID:   

GSE115781

Cell Type:   

NPCs


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

3days + 1days


Treatment Dose:   

0.25uM Aphidicolin


Targeted break:   

Chr1 bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132209681328056813263235617.4-
chr222965301929658933296560485158.82-
chr103713895637144771371416274436.33+
chr164907891149079286490791122411.55-
chr81036687431036708151036695381975.53+
chr157244820472449030724484261786.3-
chr59290720092908902929080351621.97-
chr16629233629475629433983.396-
chr7756763397567677075676557883.46+
chr16905854890589759058748780.269-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1568132209681328056813263255586.2-
chr1037141421371419513714162719008.2+
chr222965422129658047296560486916.33-
chr81036693341036697431036695383917.36+
chr164907891249079286490791123105.87-
chr157244821872448807724484261848.39-
chr59290783492908509929080351689.95-
Download the Full Merged Peak List



Motif Analysis

Manual





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