DNA Damage Atlas

GSM3189603-NPC1_Chr1_DMSO_ExpD

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7310383


Source Project ID:   

GSE115781

Cell Type:   

NPCs


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

3days + 1days


Treatment Dose:   

0.25uM Aphidicolin


Targeted break:   

Chr1 bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1568132208681328056813263264337.4-
chr222965317429658862296560485233.35-
chr164907891149079286490791124518.75-
chr103714142137141951371416273303.81+
chr157244821872448891724484261175.01-
chr6154780076154780296154780276770.242-
chr5929078349290882492908034627.605-
chrUn_gl000220118391120002118391596.049+
chr9100811036910081588.379+
chr14333323843333258533332384562.034+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1568132209681328056813263255586.2-
chr1037141421371419513714162719008.2+
chr222965422129658047296560486916.33-
chr81036693341036697431036695343917.36-
chr164907891249079286490791123105.87-
chr157244821872448807724484261848.39-
chr59290783492908509929080341689.95-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab