DNA Damage Atlas

GSM3204458-rad30-F35A_rnh201-P45D-Y219A_rad1_rev3_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7363071


Source Project ID:   

GSE110241

Cell Type:   

whole yeast culture


Organism:   

Saccharomyces cerevisiae


Genotype:   

rad30-F35A rnh201-P45D-Y219A rad1 rev3


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM5635364896597592446.49-
chrX1962141978841971831535.96-
chrM2794529312285361440.64+
chrX7131837161517153731416.26-
chrIII113431001315.5+
chrXVI5920750465481290.5+
chrM7802481070800071271.64-
chrXI6293064846639431260.96+
chrXII1064113106570510650301207.28-
chrII5098748059221122.86+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX1962511978841971831586.05-
chrX7132767161407153731448.95-
chrXI6293064764639431406.26+
chrM3075933771324121394.43-
chrXVI5920747765481177.69+
chrXII1064127106561810650301136.02-
chrIII111871001123.5+
chrII5149748059221056.98+
chrVII5289365306095298011037.63+
chrV5693655710725704501007.6-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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