DNA Damage Atlas


GSM3227944-ES1_END_seq_aB_28h_HU_28h_10mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440327


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28hrs


Treatment Dose:   

10mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.233762



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512387120182036.75-
chrX143482725143483357143483102371.679-
chr698898179890280988996732.7417+
chr392023514920237869202371619.3411-
chr610331446910331492010331464418.725+
chrX76598102765994897659908914.7974-
chr95597085855971313559709898.13917+
chr168983144789831693898314488.0195+
chr91242559791242581021242566107.82526-
chr163116102311686531163877.52993-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX143482725143483357143483102362.203-
chr117244137217244137317244137269.9572+
chr392023514920237869202371627.5796-
chrX76598103765994677659908915.1164-
chr1945038419450384414503844110.3597-
chr1631161023116682311638710.0321-
chr71402211881402214301402214039.15622-
chr95597085855971313559709898.1934+
chr51509308291509310881509308537.89278+
chr93659456366039736599037.19295+
Download the Full Merged Peak List



Motif Analysis

Manual





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