DNA Damage Atlas


GSM3227945-ES2_END_seq_aB_28h_HU_28h_10mM_rep2




Basic Information

Manual

Sample ID:   

SRR7440328


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28hrs


Treatment Dose:   

10mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227948-ES5_END_seq_aB_28h_NT_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.410047



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482565143483437143483032255.894+
chr392023328920238159202371620.0052-
chrX76598103765994677659908915.2111-
chrX17000006517001201517000909811.7158-
chrY90767649907693799076852310.4704-
chr222587559225884262258820310.4047+
chrY90774461907867659077592610.0619-
chr41552587521552589581552589549.98424-
chr28088779380888191808879179.88214+
chr163115862311668231163878.00875-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX143482725143483357143483032362.203+
chr392023514920237869202371627.5796-
chr1510338000010338000910338000917.7962-
chrX76598103765994677659908915.1164-
chr1157830833578308675783086712.0314+
chr1631161023116682311638710.0321-
chr11319979201319979331319979319.65812-
chr11712017931712018121712018129.37936-
chr71402211881402214301402214159.15622-
chr95597085855971313559709898.1934+
Download the Full Merged Peak List



Motif Analysis

Manual





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