DNA Damage Atlas


GSM3227946-ES3_END_seq_aB_28h_HU_6h_10mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440329


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

6hrs


Treatment Dose:   

10mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.196398



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482552143483595143483102177.484-
chr118706886418706969718706930316.8073-
chr255032509550331615503303112.0845-
chrX10927236210927319210927290010.0261-
chr84407328744074285440738869.90251-
chr184512138845122376451219818.18632-
chrX1090598121090607991090604067.94554-
chr95622344156224448562238757.43374+
chr51009877951009884431009882047.26513-
chr64923610649237060492364676.37788+
Download the Full Peak List



Motif Analysis

Manual





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