DNA Damage Atlas


GSM3227949-ES6_END_seq_aB_28h_HU_28h_05mM_rep1




Basic Information

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Sample ID:   

SRR7440332


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28hrs


Treatment Dose:   

0.5mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.111698



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3920235149202373492023716289.173-
chr1187069089187069321187069303146.033-
chr8440736704407389844073886100.283-
chr710442785210442850410442809569.2102-
chr478928122789283807892837062.0912-
chr713038986113039053813039018561.1317-
chrY64533902645341196453411658.4485-
chr311724006117245061172450252.9191-
chr255032553550330375503303146.1711-
chrY39211533921851392147745.7776-
Download the Full Peak List



Motif Analysis

Manual





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