DNA Damage Atlas


GSM3227950-ES7_END_seq_aT_28h_HU_28h_2mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440333


Source Project ID:   

GSE116315

Cell Type:   

Activated primary T cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28hrs


Treatment Dose:   

2mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.720972



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961142212183120181375.58-
chrUn_GL456389102221132210678440.879-
chrX143482566143483458143483102192.914-
chr222587559225906082258975855.2588-
chr1297060975970621639706167624.1766+
chrY11856605118586561185815515.4307+
chr698895899890280988997813.3711+
chrX76598314765996147659908911.5131-
chrUn_JH58430434185149110.067+
chr86599842765999063659985488.74276+
Download the Full Peak List



Motif Analysis

Manual





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