Sample Detail

Basic Information

Manual

Sample ID:

SRR7440334

Source Project ID:

GSE116315

Cell Type:

HCT116

Organism:

Homo sapiens

Treatment:

Hydroxyurea

Treatment Time:

8hrs

Treatment Dose:

10mM

Genotype:

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM3227952-ES9_END_seq_aHCT116_8h_NT_rep1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.001134

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	34035527	34036064	34036064	22.1477	-
chrX	37729538	37730190	37730071	19.1956	-
chr11	26970927	26975398	26972803	16.4775	-
chr4_gl000193_random	60222	64463	62130	16.3902	+
chr20	7643432	7644015	7644015	14.3625	-
chr4	104706677	104712208	104709579	13.8243	-
chr8	89590781	89596610	89593158	13.5689	-
chr17	69677574	69684657	69682258	12.9211	+
chr10	113425553	113430743	113428772	12.8178	+
chr6	11697407	11703027	11700650	12.6912	-

Download the Full Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download