DNA Damage Atlas


GSM3227953-ES10_END_seq_aB_28h_CDC2i_CDC7i_05h_HU_6h_10mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440336


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

CDK2/CDC7i + Hydroxyurea


Treatment Time:   

0.5hr + 6hrs


Treatment Dose:   

10 mM Roscovitine + 10 mM PHA-767491 + 10mM Hydroxyurea


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.045611



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr392023512920238969202371627.7056-
chr649236343492369774923646714.1565+
chr565199045651999416519970313.584+
chr1284772658847736088477316512.858-
chr1579062655790635337906292312.4663-
chr1350212235502124535021243611.8492-
chr396044327960454789604481911.8298-
chr1834751108347520873475154511.5827-
chr521424196214252372142481411.4816+
chr683831143838323558383181411.2705-
Download the Full Peak List



Motif Analysis

Manual





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