DNA Damage Atlas


GSM3227955-ES12_END_seq_aB_28h_ATRi_28h_rep1




Basic Information

Manual

Sample ID:   

SRR7440338


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

ATR inhibitor


Treatment Time:   

28hrs


Treatment Dose:   

10 μM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.478969



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482675143483496143483102233.236-
chr610331446710331486410331460878.5382+
chr1767741289677416776774152533.3368-
chrY11855299118586401185809221.4646+
chrX76598448765996357659908918.2642-
chr1157175941571764225717618116.4589-
chr844073465440742534407388611.6231-
chr955970532559716425597098911.3237+
chr936592223660463365990310.0498+
chr47326292773263602732632049.45494-
Download the Full Peak List



Motif Analysis

Manual





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