DNA Damage Atlas


GSM3227956-ES13_END_seq_aB_28h_HU_28h_05mM_BL6_eij_rep1




Basic Information

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Sample ID:   

SRR7440339


Source Project ID:   

GSE116315

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28hrs


Treatment Dose:   

0.5mM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3227947-ES4_END_seq_aB_28h_NT_rep1


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.179711



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482762143483542143483102229.746-
chr222587444225906342258975886.1487-
chr392023512920240009202371635.6905-
chr956223461562240855622385733.9481+
chr955970686559713735597098920.2642+
chr274623097462512746230916.3283+
chr761848916185518618495916.1479+
chr1635981459359820013598172416.0117+
chr1745486066454880404548665715.9062-
chr629746870297477942974718815.621-
Download the Full Peak List



Motif Analysis

Manual





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