DNA Damage Atlas


GSM3227958-EU1_EdU_seq_aB_28h_HU_28h_10mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440341


Source Project ID:   

GSE116316

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28 hours


Treatment Dose:   

10mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

EdU-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM06514261776.013/
rDNA24884269242572725.823/
chr124612995246132382461311525.0071/
rDNA41929437614223121.732/
chrX76598816765991827659903318.5496/
rDNA074357718.5006/
chrUn_JH58430410672210695710683816.7634/
rDNA38650411793938015.378/
chrX14348295414348318314348306713.9085/
chrUn_JH58430469532697756965213.797/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM06514261790.3745
rDNA41929437614223121.7561
rDNA574357718.4172
chrUn_JH58430410672210695710683818.3498
chrX76598816765991827659903317.7894
chrX14348295414348318314348306716.2467
rDNA38650411793938015.9481
chrUn_JH58430469532697756965213.4219
chr1729103793291042622910402213.1365
chrUn_JH58430472789733827313112.154
Download the Full Merged Peak List



Motif Analysis

Manual





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