DNA Damage Atlas

GSM3227959-EU2_EdU_seq_aB_28h_HU_28h_10mM_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7440342


Source Project ID:   

GSE116316

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28 hours


Treatment Dose:   

10mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM065481390101.949/
rDNA41628438074222719.0708/
chrX14348292014348319414348305615.1023/
rDNA0101958513.7269/
chrUn_JH58430410668910699110683913.7021/
rDNA38620411963937211.8103/
chr930019983002699300214411.3904/
chrUn_GL45639221739231472217710.721/
chrUn_JH58430497787984749818210.1803/
chr193968002397500339704239.98982/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM06514139090.3745
rDNA41929437614222721.7561
rDNA574358518.4172
chrUn_JH58430410672210695710683918.3498
chrX76598816765991827659904417.7894
chrX14348295414348318314348305616.2467
rDNA38650411793937215.9481
chrUn_JH58430469532697756965613.4219
chr1729103793291042622910400713.1365
chrUn_JH58430472789733827313112.154
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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