DNA Damage Atlas

GSM3227960-EU3_EdU_seq_aB_28h_HU_28h_10mM_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7440343


Source Project ID:   

GSE116316

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28 hours


Treatment Dose:   

10mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM06532260891.2494/
rDNA24863269862646327.2019/
rDNA41906437834216920.8872/
rDNA38630412033934117.8812/
chrUn_JH58430410670510697510683916.9841/
rDNA596716514.0386/
chr1729103776291042622910400113.4794/
chrUn_JH58430469518697936965412.6439/
chr930020143002684300214411.6579/
chrUn_GL45638910273108951064311.3423/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM06514260890.3745
rDNA41929437614216921.7561
rDNA574316518.4172
chrUn_JH58430410672210695710683918.3498
chrX76598816765991827659903517.7894
chrX14348295414348318314348306616.2467
rDNA38650411793934115.9481
chrUn_JH58430469532697756965413.4219
chr1729103793291042622910400113.1365
chrUn_JH58430472789733827313112.154
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab