DNA Damage Atlas

GSM3227961-EU4_EdU_seq_aB_28h_NT_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7440344


Source Project ID:   

GSE116316

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

NT


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0658778752.933/
chrUn_JH58430410664710703510684047.5239/
chrUn_JH58430497738985189819444.1759/
chrUn_JH58430472682735077313138.1541/
chr930019543003183300214831.8255/
chr930203113020705302050731.2001/
chrUn_GL4563899947112241063324.5034/
chrX14348272314348338814348305621.5664/
chrUn_JH58430410335710400410354218.424/
chrUn_JH58430490963913549115717.1488/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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