DNA Damage Atlas


GSM3227973-CS1_ChIP_seq_RPA_aB_28h_HU_28h_10mM_rep1




Basic Information

Manual

Sample ID:   

SRR7440356


Source Project ID:   

GSE116320

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

28 hours


Treatment Dose:   

10mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-RPA)


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA9716120861085083.8869/
rDNA62969453912083.509/
chrM13654644245.4683/
chrX14348287914348323514348305632.97/
chr1091082360910830799108280324.8634/
chr1561986288619871466198662722.94/
chr1080264517802654428026498022.4497/
chr1573724585737253827372478620.391/
chr386223911862244358622418420.3318/
chr1589211256892118238921151319.1084/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1561986477619867766198662763.4122/
chrM29651644245.7907/
chrX14348287914348323214348305633.2502/
rDNA41658436274217221.3681/
chr668121383681220536812167614.2842/
chr668270812682713816827119813.6462/
chr812332429312332456512332447613.2775/
chrUn_JH58430410667110690310684613.2317/
chr1713760278137606851376049810.6481/
Download the Full Merged Peak List



Motif Analysis

Manual





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