DNA Damage Atlas

GSM3272766-Damage-seq_Liver_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7526040


Source Project ID:   

GSE117167

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

1mg/mL


Harvested Time:   

Treated with drug at ZT1 (8 am) and sacrificed at ZT5 (12 pm).


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93002095300218830021521710.58-
chrUn_GL456389105351082610634893.035+
chrX143483002143483112143483047503.163+
chr9303482730349103034910499.145-
chrUn_JH584304980809852898233249.83-
chr9300719130074853007317249.247-
chrUn_JH584304910969121891190244.284-
chrUn_JH584304991729945299180223.696+
chr9302044030205843020450218.903+
chrUn_JH584304741587443874166212.584+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr93002095300218830021521392.97-
chrUn_GL456389105351082610634672.644+
chrX143483002143483112143483047551.179+
chr9303483030349103034910421.055-
chrUn_JH584304911079121491190229.219-
chrUn_JH584304741587439274166191.331+
chrUn_JH584304980809852598233190.558-
chr9300719430074853007317187.765-
chrUn_GL456392218042295222101175.945+
chrUn_JH584304102954103779103523173.528+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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