DNA Damage Atlas


GSM3272778-XR-seq_Spleen_2




Basic Information

Manual

Sample ID:   

SRR7526052


Source Project ID:   

GSE117167

Cell Type:   

Spleen


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Time:   

4hrs


Treatment Dose:   

1mg/mL


Harvested Time:   

Treated with drug at ZT1 (8 am) and sacrificed at ZT5 (12 pm).


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Others:   

sex: female


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1749928994997849499480110.0147/
chr27297754472982266729797297.98954/
chr135520867455214551552109717.75459/
chr158158390081587737815859017.62988/
chr11337131513375668133731077.62679/
chr159628316596289552962869447.59612/
chr35841375758418150584150297.48864/
chr54323188743236519432340117.28143/
chr119718556297189709971876897.24147/
chr119736156897364758973624877.23783/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638910224110631066414.659/
chr272978764729812937297972914.2314/
chr910107342210107532310107453012.3837/
chr1749935794997546499480112.268/
chr1121238199212399122123914712.0249/
chr565763128657652116576406411.193/
chr912442253412442434712442312410.9039/
chr692090610920926219209164710.8058/
chr314288106914288249514288176510.7941/
chr790442501904439729044295410.7717/
Download the Full Merged Peak List



Motif Analysis

Manual





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