DNA Damage Atlas

GSM3305300-Tp53-KO-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7589978


Source Project ID:   

GSE117628

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Strain:   

129


Genotype:   

Tp53-/-


Targeted break:   

5′Sµ bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211327165111327789011327677970828.9-
chr1211333767011334142611333865619218.1-
chr1211332753711333156011333102817432-
chr120674154206743562067415413073.5+
chr121132614121132625481132618166715.76-
chr194695774146957943469579414357.83-
chr121132914601132916961132916603730.01-
chr121134763911134765931134763912905.22+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211327391911327789011327677998814.9-
chr1211332753711333120111333102830612.8-
chr1211333767011334124011333865618216.2-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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