DNA Damage Atlas

GSM3305310-DNA-PKcs_KD/KD-2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7589988


Source Project ID:   

GSE117628

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Strain:   

129


Genotype:   

DNA-PkcsKD/KD


Targeted break:   

5′Sµ bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211342460811343203811343097038260.8-
chr633629401336296023362960113642.9-
chr1211332743911333109911332763911987.9-
chr1619067115190673771906711510466.5+
chr132216208522162286221622859095.29-
chr121132756121132770221132758129075.94-
chr161538228015382483153824809005.68-
chr67072360470723830707238048089.18-
chr121132597621132599981132599627746.41-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342860011343203811343097056767.3-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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