DNA Damage Atlas

GSM3351201-SSDS_Ankrd31_KO_Adult

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7739671


Source Project ID:   

GSE118913

Cell Type:   

Testis


Organism:   

Mus musculus


Genotype:   

Ankrd31-/-


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3351208-IgS_SSDS_wildtype_testis_Adult


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15100227803100228437100227828117.925+
chr1452014220520149555201443686.8013+
chrX13801839113801869313801858485.8223+
chr1012298563212298631812298569475.5636-
chr1616926863169269811692693667.5837-
chrX51890197518904935189046360.6198+
chrX52717956527181645271807957.5111-
chrX64876081648768576487653053.9537+
chrX10271124310271143310271126852.4663-
chrX15691408615691455415691438351.121+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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