DNA Damage Atlas

GSM3362297-UVplus_cellular_rep_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR7770310


Source Project ID:   

GSE119249

Cell Type:   

A375


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

1000 J/m2


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28301291752866612.4476+
rDNA1332514847140596.3097+
chrUn_gl0002201519816774153922.89906+
chrUn_gl0002205993761243601992.74592-
chrUn_gl0002201005285813582.57734+
chrUn_gl0002207915280866794812.555+
chrUn_gl0002205472357971556082.54796+
chr12349136712349155012349141072.33651+
chrUn_gl0002201711819440179492.32407-
chrUn_gl0002203172536564360422.20192+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28301291472866611.5774+
rDNA1332514847140595.86063+
chr165379652153796528537965214.39509+
chrUn_gl0002205993761242601992.70055-
chrUn_gl0002201005285813582.53309+
chrUn_gl0002207915280866794812.42952+
chrUn_gl0002205472357971556082.39824+
chrUn_gl0002202612829451278542.25699-
chr12349136712349155012349141072.19552+
chrUn_gl0002201711819440179492.12599-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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