DNA Damage Atlas

GSM3362301-UVminus_control_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7770314


Source Project ID:   

GSE119249

Cell Type:   

A375


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28418291692860611.7412+
rDNA1326914710140587.72039+
chr138954306189543858895433054.23931-
chr98933666893426589337093.9897+
chr175703494057035336570349403.95392+
chrUn_gl0002201060284716023.9198-
chr12382569972382581482382573253.86623+
chr97567914175679601756795563.76211-
chr11791563341791570391791565343.74051-
chr72283429228402222834743.61317-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28418291692860614.035+
rDNA1326914710140587.93604+
chr19634787896348114963479484.65534-
chrUn_gl0002201087242316024.15296-
rDNA2015220618201843.66909+
chr34880103148801614488011863.59699+
chr11891292151891294561891292163.58437-
chrUn_gl0002203326534443339413.49751+
chr11963745951963752891963752123.2434-
chr138631400586314336863141403.19473+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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