DNA Damage Atlas

GSM3375080-RAG1A-HCT116-rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7784882


Source Project ID:   

GSE116231

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

CaPO4


Treatment Time:   

48hrs


Targeted break:   

RAG1A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1140605525406057474060573986473.9-
chr1568132264681328016813238384497.6+
chr1247002772470032484700298784326.9-
chr1918366309183665101836630969460.7+
chrM13317135181331769460.7+
chr1011236835511236856011236856059592.2-
chr1137853770378539713785397152095.5-
chr1165779819657800236577981951329.4+
chr1768072816807486680748651079-
chr1914173291417749141753945707.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1568132264681327096813238399570.1+
chr1247002783470032364700298767941.2-
chr1914173391417740141753946352.4-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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