DNA Damage Atlas

GSM3375083-RAG1A-K562-rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7784885


Source Project ID:   

GSE116231

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

CaPO4


Treatment Time:   

48hrs


Targeted break:   

RAG1A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1247002764470032134700298754496.5-
chr1568132218681328036813263250100.8-
chr1914173041417738141753426641.1+
chr738350168383505823835037018835.3+
chr715593095215593115715593115617051.5-
chr1575746436757468687574664313693.4-
chr1055658288556584985565849812804.3-
chr1196508743965089459650894511980.2-
chr1936533114365333193653311411804.9+
chr1145576902455771054557690210596.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1247002764470032054700298756488.8-
chr1568132226681327956813263246849.5-
chr1575746436757466617574664331171.1-
chr1914173211417738141753423210.5+
chr738350168383505823835037015240.4+
chr715593095215593115715593115613836.2-
chr1478583085785834897858328810294.6-
chr71129305611129307611129305614861.79+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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