DNA Damage Atlas


GSM3375092-RAG1A-D1135E-rep3




Basic Information

Manual

Sample ID:   

SRR7784894


Source Project ID:   

GSE116231

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4


Treatment Time:   

48hrs


Targeted break:   

RAG1A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12470027534700325547002987171797-
chr1568132216681328036813263289021.4-
chr1914173131417761141754064472+
chr1478583079785835087858328840206.1-
chr715593094315593136315593115634020.5-
chr1194992245949930859499286527580.9-
chr711293035311293077111293056121975+
chr1575746434757468727574665916777.3-
chr550786690507868935078689315585.8-
chr738350157383505803835036915200.7-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12470027534700321647002987174164-
chr1568132216681328016813263294747.9-
chr1914173131417755141754063008.2+
chr1194992656949930859499286549958.3-
chr1478583079785835017858328840851.1-
chr715593094315593136115593115632486.5-
chr1575746442757468687574665921521-
chr711293036011293077011293056120896.2+
chr738350157383505723835036915899-
chr164992294649927176499250612477.4+
Download the Full Merged Peak List



Motif Analysis

Manual





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