DNA Damage Atlas


GSM3375102-EMX1-rep1




Basic Information

Manual

Sample ID:   

SRR7784904


Source Project ID:   

GSE116231

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4


Treatment Time:   

48hrs


Targeted break:   

EMX1


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15441086724411029344109763109526-
chr1568132215681327976813263285519.6-
chr545358119453595884535906777267.1+
chr221984485321984543321984507250232.9-
chr592269519227375922716235073.2-
chr812880105112880146812880123920378.2+
chr223603311623603331723603331610569.3-
chr396585183965853879658538710413.9-
chr1367184690671848956718469010363.1+
chr114784292847843129478429299059.41+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15681322156813279768132632118245-
chr2219844853219845287219845072114688-
chr1544108672441102934410976397783.9-
chr545358710453595884535906796968.6+
chr592269519227375922716232231-
chr812880105112880146712880123927254+
chr1152479505248311524810911678.5+
Download the Full Merged Peak List



Motif Analysis

Manual





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