DNA Damage Atlas

GSM3424998-XPCCPDrep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7989800


Source Project ID:   

GSE121042

Cell Type:   

GM15983


Organism:   

Homo sapiens


Treatment:   

UV


Treatment Dose:   

20J/m2


Genotype:   

XP-C mutant


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr81177635781177692351177676089.95002/
chr19718654297189753971879788.80153/
chr172411454241623324149537.75868/
chr11096171521096197801096186017.429/
chr145557432055575655555748417.37111/
chr18616967686174978861739357.33485/
chr91161693871161737971161721727.30111/
chr191977197819775527197732047.0982/
chr203032584430329213303270267.0101/
chr175728669257293353572903387.00841/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr811776357811776905211776760810.2395/
chr19718654297189753971879788.80153/
chr172413388241623324149538.07988/
chr101046135551046146331046141208.03301/
chr194002889240031416400300537.85987/
chr19867453198677519986757567.77223/
chr91161693871161735181161721727.73704/
chr51323612381323627261323616337.72421/
chr18616987186174978861739357.5995/
chr51406974551407009581406990727.59593/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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