DNA Damage Atlas


GSM3425001-GM12878cisRep2




Basic Information

Manual

Sample ID:   

SRR7989803


Source Project ID:   

GSE121042

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

1.5hr


Treatment Dose:   

200uM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163019287530200312301971874.38389/
chr199107179145559127503.38844/
chr81450553351450624951450583763.3405/
chr164672993467772646749153.31452/
chr193662928236634595366310363.20516/
chr27470659074711716747096033.1979/
chr203453992034544338345423583.18032/
chr191879657188659018853013.15145/
chr222410430024111798241085733.14746/
chr191071198810716341107139433.12857/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr163019291130200276301971874.42675/
chr199110549143629127503.82136/
chr164673391467758646749153.69625/
chr81450558411450622971450583763.65194/
chr203454038934544149345423583.62804/
chr193662971136634470366310363.55917/
chr121128180001128212301128198333.37164/
chr101038236661038300441038253473.33657/
chr61570968461571025961570989133.33325/
chr113327788833281738332790953.32473/
Download the Full Merged Peak List



Motif Analysis

Manual





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