DNA Damage Atlas

GSM3425001-GM12878cisRep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR7989803


Source Project ID:   

GSE121042

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

1.5hr


Treatment Dose:   

200uM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163019287530200312301971874.38389/
chr199107179145559127503.38844/
chr81450553351450624951450583763.3405/
chr164672993467772646749153.31452/
chr193662928236634595366310363.20516/
chr27470659074711716747096033.1979/
chr203453992034544338345423583.18032/
chr191879657188659018853013.15145/
chr222410430024111798241085733.14746/
chr191071198810716341107139433.12857/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr163019291130200276301971874.42675/
chr199110549143629127503.82136/
chr164673391467758646749153.69625/
chr81450558411450622971450583763.65194/
chr203454038934544149345423583.62804/
chr193662971136634470366310363.55917/
chr121128180001128212301128198333.37164/
chr101038236661038300441038253473.33657/
chr61570968461571025961570989133.33325/
chr113327788833281738332790953.32473/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab