DNA Damage Atlas

GSM3428232-13_APseq_control_rep1_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8066551


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

control


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

AP-seq


Others:   

condition: GSM3428220-01_APseq_control_rep1_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28067287762857929.1486/
rDNA31087325663196826.6693/
rDNA23143237712357123.3543/
rDNA41455426964216321.0401/
chrUn_gl00022013161713201913181114.096/
rDNA2904129360291999.40426/
chrUn_gl0002201326741331551329579.23989/
chrUn_gl0002249348980296027.83152/
chrUn_gl0002201288801296671292985.36489/
chr9_gl000199_random9507895321951985.02965/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28082287602857935.239
rDNA31112325503196830.1495
rDNA23187237532357127.5615
rDNA41455426774216327.3188
chrUn_gl0002201288801294531292988.15242
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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