DNA Damage Atlas

GSM3428233-14_APseq_control_rep2_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8066552


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

control


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

AP-seq


Others:   

condition: GSM3428221-02_APseq_control_rep2_input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28082287712857025.1267/
rDNA31089325883196719.411/
rDNA23165237712357319.2749/
rDNA19072194661926818.5288/
rDNA41435426774214716.3742/
chrUn_gl00022013262813315513296613.259/
chrUn_gl0002201316101320541318059.86535/
chr9_gl000199_random1602971609461607706.58848/
chr9_gl000199_random3411734653344714.66974/
chrUn_gl0002201288691296991293144.27215/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28082287602857035.239
rDNA31112325503196730.1495
rDNA23187237532357327.5615
rDNA41455426774214727.3188
chrUn_gl0002201288801294531293148.15242
Download the Full Merged Peak List


Visualization

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Motif Analysis

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