DNA Damage Atlas

GSM3428234-15_APseq_control_rep3_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8066553


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

control


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

AP-seq


Others:   

condition: GSM3428222-03_APseq_control_rep3_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047287602856340.3854/
rDNA31112325503202436.4668/
rDNA41438426894214334.8068/
rDNA23187237532357931.8481/
rDNA29048293622920414.9111/
chr213314103513314128213314115711.3735/
chrUn_gl00022012713912749812731711.0857/
chrUn_gl0002201288491294531292959.30214/
chr56571264657168165714968.9824/
chrUn_gl0002146433165270645078.22729/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28082287602856335.239
rDNA31112325503202430.1495
rDNA23187237532357927.5615
rDNA41455426774214327.3188
chrUn_gl0002201288801294531292958.15242
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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