DNA Damage Atlas

GSM3428235-16_APseq_6Gy_30min_rep1_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8066554


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

X-ray


Treatment Time:   

30min


Treatment Dose:   

6Gy


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

AP-seq


Others:   

condition: GSM3428223-04_APseq_6Gy_30min_rep1_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28065288012853751.6699/
rDNA31096325583197747.5796/
rDNA23160237622357141.5877/
rDNA41145427164213926.6276/
chrUn_gl00022667837213700126.1634/
chr9_gl000199_random15550815603715587125.161/
chrUn_gl00022013659713701813679821.4534/
chrUn_gl00022013159613201613181220.75/
chrUn_gl00022013261913317113296015.2139/
chrUn_gl00022013339013375013358114.9651/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28083288012853746.4197
rDNA31121325583197739.2304
rDNA23160237622357137.2873
rDNA41466426944213933.1782
chrUn_gl00022013264213313013296015.0762
chr213314102613314125913314118913.6419
chr182289249322892741228926158.07367
chr71247792301247794701247793637.6384
chrUn_gl0002201277241281331278977.36313
chr9_gl000199_random5115051382512956.58621
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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