DNA Damage Atlas

GSM3428237-18_APseq_6Gy_30min_rep3_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8066556


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

X-ray


Treatment Time:   

30min


Treatment Dose:   

6Gy


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

AP-seq


Others:   

condition: GSM3428225-06_APseq_6Gy_30min_rep3_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28083288022857232.5243/
rDNA23157237652356428.0317/
rDNA31121325673197927.4105/
rDNA41453426994213923.3275/
chrUn_gl000226031015422.1618/
chrUn_gl00022013162613200713181520.1125/
chr9_gl000199_random92567933459275512.142/
chrUn_gl00022013260813315713297211.3107/
rDNA2254422954227329.66721/
chr9_gl000199_random1604061609221607627.68131/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28083288012857246.4197
rDNA31121325583197939.2304
rDNA23160237622356437.2873
rDNA41466426944213933.1782
chrUn_gl00022013264213313013297215.0762
chr213314102613314125913314115913.6419
chr182289249322892741228925958.07367
chr71247792301247794701247793687.6384
chrUn_gl0002201277241281331279147.36313
chr9_gl000199_random5115051382512316.58621
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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