DNA Damage Atlas

GSM3428240-21_OGG1-APseq_control_rep3_enrichment

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8066559


Source Project ID:   

GSE121005

Cell Type:   

HepG2


Organism:   

Homo sapiens


Treatment:   

control


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

OGG1-AP-seq


Others:   

condition: GSM3428228-09_OGG1-APseq_control_rep3_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28012287712857323.5987/
rDNA23272237672356721.2632/
rDNA31116325503198819.0577/
rDNA19052194381924415.7865/
rDNA41483426794215014.8217/
chrUn_gl00022628383545330112.406/
chr162254287822543278225430987.8478/
chr21331410251331413091331411665.85171/
chr9_gl000199_random7271373064728875.78688/
chr9_gl000199_random3415834700345035.45104/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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